Alright, I have asked alott of dumb questions and recieved allot of greeat answears (and didn't supply many pics, sorry Hammer :-/ )
Well here is what I started with:
And here are a few of the mods/repairs I have atempted:
redid my rod boxes( I havent replaced the trim and I actually mightr not, maybe just run some sealent along the top:

added a anchor pulpit and removed my rails:

changed the bimini:
I also added a second battery in the cudy to run my GPS/Sonar and the live well and spot light and a few other things.
More Questions to come! ;D ;D
Thanks for all the help!