many questions about repairing/replacing stringers

[carboncow]

I don't even think I saw any drain wholes where where the stringer meets the transom...I'll have to look again. What builder doesn't seal whole!?!?! But I digress...

So are most guys having to router out the wood or does it often pull out from delimitating from the glass?

Or is it best to just cut out that which is soft only? My guess is it's most likely to be soft on the bottom so if we cut the tops and it looks hard it may still be soft at the bottom, correct?